From 00e79195a53717435933173dee055f5c430850d2 Mon Sep 17 00:00:00 2001
From: John Darrington
Date: Fri, 18 Jul 2014 10:16:54 +0200
Subject: gnu: Enable tests for patch.

* gnu/packages/base.scm (patch): Enable test and add "ed" as input.
---
 gnu/packages/base.scm | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/base.scm b/gnu/packages/base.scm
index c280cff19..005e1c000 100644
--- a/gnu/packages/base.scm
+++ b/gnu/packages/base.scm
@@ -28,6 +28,7 @@
   #:use-module (gnu packages bootstrap)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages gcc)
+  #:use-module (gnu packages ed)
   #:use-module (gnu packages gawk)
   #:use-module (gnu packages guile)
   #:use-module (gnu packages multiprecision)
@@ -164,12 +165,9 @@ standard utility.")
              (base32
               "1sqckf560pzwgniy00vcpdv2c9c11s4cmhlm14yqgg8avd3bl94i"))))
    (build-system gnu-build-system)
-   (native-inputs '())                      ; FIXME: needs `ed' for the tests
-   (arguments
-    '(#:tests? #f)
+   (native-inputs `(("ed", ed)))
     ;; TODO: When cross-compiling, add this:
     ;;  '(#:configure-flags '("ac_cv_func_strnlen_working=yes"))
-    )
    (synopsis "Apply differences to originals, with optional backups")
    (description
     "Patch is a program that applies changes to files based on differences
-- 
cgit v1.3


From 5c47b06b4370e7d6590b0c75404d694a52897293 Mon Sep 17 00:00:00 2001
From: Jason Self
Date: Sun, 20 Jul 2014 06:55:33 -0700
Subject: gnu: acl: Update to 2.2.52.

* gnu/packages/acl.scm (acl): Update to version 2.2.52.
---
 gnu/packages/acl.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/acl.scm b/gnu/packages/acl.scm
index 37c0b71dc..ef1502256 100644
--- a/gnu/packages/acl.scm
+++ b/gnu/packages/acl.scm
@@ -28,7 +28,7 @@
 (define-public acl
   (package
     (name "acl")
-    (version "2.2.51")
+    (version "2.2.52")
     (source
      (origin
       (method url-fetch)
@@ -36,7 +36,7 @@
                           version ".src.tar.gz"))
       (sha256
        (base32
-        "09aj30m49ivycl3irram8c3givc0crivjm3ymw0nhfaxrwhlb186"))))
+        "08qd9s3wfhv0ajswsylnfwr5h0d7j9d4rgip855nrh400nxp940p"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases
-- 
cgit v1.3


From a092cd820b7e942d74d2745b358acd472af38b59 Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Sun, 3 Aug 2014 20:04:37 -0400
Subject: gnu: coreutils: Update to 8.23.

* gnu/packages/patches/coreutils-skip-nohup.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove coreutils-skip-nohup.patch.
* gnu/packages/patches/coreutils-dummy-man.patch: Adapt for 8.23.
* gnu/packages/base.scm (coreutils): Update to 8.23.
---
 gnu-system.am                                   |  1 -
 gnu/packages/base.scm                           |  8 +++----
 gnu/packages/patches/coreutils-dummy-man.patch  | 10 ++++-----
 gnu/packages/patches/coreutils-skip-nohup.patch | 28 -------------------------
 4 files changed, 8 insertions(+), 39 deletions(-)
 delete mode 100644 gnu/packages/patches/coreutils-skip-nohup.patch

(limited to 'gnu')

diff --git a/gnu-system.am b/gnu-system.am
index 6e1e8afec..3f1c3c6ee 100644
--- a/gnu-system.am
+++ b/gnu-system.am
@@ -288,7 +288,6 @@ dist_patch_DATA =						\
   gnu/packages/patches/clucene-pkgconfig.patch			\
   gnu/packages/patches/cmake-fix-tests.patch			\
   gnu/packages/patches/coreutils-dummy-man.patch		\
-  gnu/packages/patches/coreutils-skip-nohup.patch		\
   gnu/packages/patches/cpio-gets-undeclared.patch		\
   gnu/packages/patches/cssc-gets-undeclared.patch               \
   gnu/packages/patches/cssc-missing-include.patch               \
diff --git a/gnu/packages/base.scm b/gnu/packages/base.scm
index 005e1c000..c61d8ce33 100644
--- a/gnu/packages/base.scm
+++ b/gnu/packages/base.scm
@@ -233,17 +233,15 @@ used to apply commands with arbitrarily long arguments.")
 (define-public coreutils
   (package
    (name "coreutils")
-   (version "8.22")
+   (version "8.23")
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://gnu/coreutils/coreutils-"
                                 version ".tar.xz"))
             (sha256
              (base32
-              "04hjzzv434fb8ak3hh3dyhdvg3hqjjwvjmjxqzk1gh2jh6cr8gjv"))
-            (patches (list (search-patch "coreutils-dummy-man.patch")
-                           ;; TODO: remove this patch for >= 8.23
-                           (search-patch "coreutils-skip-nohup.patch")))))
+              "0bdq6yggyl7nkc2pbl6pxhhyx15nyqhz3ds6rfn448n6rxdwlhzc"))
+            (patches (list (search-patch "coreutils-dummy-man.patch")))))
    (build-system gnu-build-system)
    (inputs `(("acl"  ,acl)                        ; TODO: add SELinux
              ("gmp"  ,gmp)))
diff --git a/gnu/packages/patches/coreutils-dummy-man.patch b/gnu/packages/patches/coreutils-dummy-man.patch
index f6a6a3100..a43cfc47c 100644
--- a/gnu/packages/patches/coreutils-dummy-man.patch
+++ b/gnu/packages/patches/coreutils-dummy-man.patch
@@ -7,15 +7,15 @@ would appear when compiling:
 
   dummy-man: too many non-option arguments
 
---- coreutils-8.22/Makefile.in	2013-12-13 16:20:00.000000000 +0100
-+++ coreutils-8.22/Makefile.in	2014-02-28 10:53:27.000000000 +0100
-@@ -9977,8 +9977,8 @@ man/yes.1:       src/yes
+--- coreutils-8.23/Makefile.in	2014-07-18 18:22:24.000000000 -0400
++++ coreutils-8.23/Makefile.in	2014-08-03 20:21:10.849158313 -0400
+@@ -14076,8 +14076,8 @@
  	  && $(run_help2man)						\
  		     --source='$(PACKAGE_STRING)'			\
  		     --include=$(srcdir)/man/$$name.x			\
--		     --output=$$t/$$name.1 $$t/$$name			\
+-		     --output=$$t/$$name.1 $$t/$$argv			\
  		     --info-page='coreutils \(aq'$$name' invocation\(aq' \
-+		     --output=$$t/$$name.1 $$t/$$name			\
++		     --output=$$t/$$name.1 $$t/$$argv			\
  	  && sed \
  	       -e 's|$*\.td/||g' \
  	       -e '/For complete documentation/d' \
diff --git a/gnu/packages/patches/coreutils-skip-nohup.patch b/gnu/packages/patches/coreutils-skip-nohup.patch
deleted file mode 100644
index f5283a6b2..000000000
--- a/gnu/packages/patches/coreutils-skip-nohup.patch
+++ /dev/null
@@ -1,28 +0,0 @@
-commit 5dce6bdfafc930dfd17d5d16aea7d1add3472066
-Author: Pádraig Brady <P@draigBrady.com>
-Date:   Wed Mar 5 15:14:07 2014 +0000
-
-    tests: fix false failure in nohup.sh in non tty builds
-    
-    * tests/misc/nohup.sh: When running tests without a controlling tty,
-    an exec failure is triggered in a subshell, which causes POSIX
-    shells to immediately exit the subshell.  This was brought
-    to notice by the newly conforming bash 4.3.
-    Fixes http:/bugs.gnu.org/16940
-
-diff --git a/tests/misc/nohup.sh b/tests/misc/nohup.sh
-index 6d2b515..2328b43 100755
---- a/tests/misc/nohup.sh
-+++ b/tests/misc/nohup.sh
-@@ -63,6 +63,11 @@ rm -f nohup.out err
- # to stderr must be fatal.  Requires stdout to be terminal.
- if test -w /dev/full && test -c /dev/full; then
- (
-+  # POSIX shells immediately exit the subshell on exec error.
-+  # So check we can write to /dev/tty before the exec, which
-+  # isn't possible if we've no controlling tty for example.
-+  test -c /dev/tty && >/dev/tty || exit 0
-+
-   exec >/dev/tty
-   test -t 1 || exit 0
-   nohup echo hi 2> /dev/full
-- 
cgit v1.3


From d6535cf1db3e07b52744e9341c17f6ccea62c75f Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Sun, 3 Aug 2014 20:05:55 -0400
Subject: gnu: tar: Update to 1.28.

* gnu/packages/base.scm (tar): Update to 1.28.
---
 gnu/packages/base.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/base.scm b/gnu/packages/base.scm
index c61d8ce33..8060ab693 100644
--- a/gnu/packages/base.scm
+++ b/gnu/packages/base.scm
@@ -133,14 +133,14 @@ implementation offers several extensions over the standard utility.")
 (define-public tar
   (package
    (name "tar")
-   (version "1.27.1")
+   (version "1.28")
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://gnu/tar/tar-"
-                                version ".tar.bz2"))
+                                version ".tar.xz"))
             (sha256
              (base32
-              "1iip0fk0wqhxb0jcwphz43r4fxkx1y7mznnhmlvr618jhp7b63wv"))))
+              "1wi2zwm4c9r3h3b8y4w0nm0qq897kn8kyj9k22ba0iqvxj48vvk4"))))
    (build-system gnu-build-system)
    (synopsis "Managing tar archives")
    (description
-- 
cgit v1.3


From 8174e9b7ae945eaf4856d455209341688934fa1b Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Wed, 20 Aug 2014 01:29:42 -0400
Subject: gnu: libatomic-ops: Update to 7.4.2.

* gnu/packages/bdw-gc.scm (libatomic-ops): Update to 7.4.2.
---
 gnu/packages/bdw-gc.scm | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/bdw-gc.scm b/gnu/packages/bdw-gc.scm
index fb3c43da8..3134f1855 100644
--- a/gnu/packages/bdw-gc.scm
+++ b/gnu/packages/bdw-gc.scm
@@ -1,5 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2012, 2013, 2014 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2014 Mark H Weaver <mhw@netris.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -64,15 +65,15 @@ C or C++ programs, though that is not its primary goal.")
 (define-public libatomic-ops
   (package
     (name "libatomic-ops")
-    (version "7.4.0")
+    (version "7.4.2")
     (source (origin
               (method url-fetch)
               (uri (string-append
-                    "http://www.hboehm.info/gc/gc_source/libatomic_ops-"
+                    "http://www.ivmaisoft.com/_bin/atomic_ops/libatomic_ops-"
                     version ".tar.gz"))
               (sha256
                (base32
-                "0njv3n63zw6v45k68z6dz14g2hpk5p230ncwmdfkglsljb1cqx98"))))
+                "1pdm0h1y7bgkczr8byg20r6bq15m5072cqm5pny4f9crc9gn3yh4"))))
     (build-system gnu-build-system)
     (outputs '("out" "debug"))
     (synopsis "Accessing hardware atomic memory update operations")
-- 
cgit v1.3


From a23276cd8b7cabb8cba12b9bc260eb7925ce4ee2 Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Wed, 20 Aug 2014 01:30:51 -0400
Subject: gnu: libgc: Update to 7.4.2.

* gnu/packages/bdw-gc.scm (libgc): Update to 7.4.2.
---
 gnu/packages/bdw-gc.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/bdw-gc.scm b/gnu/packages/bdw-gc.scm
index 3134f1855..df7cd1b48 100644
--- a/gnu/packages/bdw-gc.scm
+++ b/gnu/packages/bdw-gc.scm
@@ -89,14 +89,14 @@ lock-free code, experiment with thread programming paradigms, etc.")
 
 (define-public libgc
   (package (inherit libgc-7.2)
-    (version "7.4.0")
+    (version "7.4.2")
     (source (origin
               (method url-fetch)
               (uri (string-append "http://www.hboehm.info/gc/gc_source/gc-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "10z2nph62ilab063wygg2lv0jxlsbcf2az9w1lx01jzqj5lzry31"))))
+                "18mg28rr6kwr5clc65k4l4hkyy4kd16amx831sjf8q2lqkbhlck3"))))
 
     ;; New dependencies.
     (native-inputs `(("pkg-config" ,pkg-config)))
-- 
cgit v1.3


From 785c33e3af9107118e57ba9efb39152f1b467a6f Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Wed, 20 Aug 2014 01:43:05 -0400
Subject: gnu: libffi: Update to 3.1.

* gnu/packages/patches/libffi-mips-n32-fix.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/libffi.scm (libffi): Update to 3.1.  Remove patch.
---
 gnu-system.am                                  |  1 -
 gnu/packages/libffi.scm                        |  7 +++----
 gnu/packages/patches/libffi-mips-n32-fix.patch | 21 ---------------------
 3 files changed, 3 insertions(+), 26 deletions(-)
 delete mode 100644 gnu/packages/patches/libffi-mips-n32-fix.patch

(limited to 'gnu')

diff --git a/gnu-system.am b/gnu-system.am
index 3f1c3c6ee..3da1c75b9 100644
--- a/gnu-system.am
+++ b/gnu-system.am
@@ -328,7 +328,6 @@ dist_patch_DATA =						\
   gnu/packages/patches/kmod-module-directory.patch		\
   gnu/packages/patches/libbonobo-activation-test-race.patch	\
   gnu/packages/patches/libevent-dns-tests.patch			\
-  gnu/packages/patches/libffi-mips-n32-fix.patch		\
   gnu/packages/patches/liboop-mips64-deplibs-fix.patch		\
   gnu/packages/patches/libmad-mips-newgcc.patch			\
   gnu/packages/patches/libtheora-config-guess.patch		\
diff --git a/gnu/packages/libffi.scm b/gnu/packages/libffi.scm
index c5e265087..33e10d6fc 100644
--- a/gnu/packages/libffi.scm
+++ b/gnu/packages/libffi.scm
@@ -29,11 +29,11 @@
          ;; available in $includedir where some users expect them.
          '(lambda* (#:key outputs #:allow-other-keys)
             (define out (assoc-ref outputs "out"))
-            (symlink (string-append out "/lib/libffi-3.0.13/include")
+            (symlink (string-append out "/lib/libffi-3.1/include")
                      (string-append out "/include")))))
    (package
     (name "libffi")
-    (version "3.0.13")
+    (version "3.1")
     (source (origin
              (method url-fetch)
              (uri
@@ -41,8 +41,7 @@
                              name "-" version ".tar.gz"))
              (sha256
               (base32
-               "077ibkf84bvcd6rw1m6jb107br63i2pp301rkmsbgg6300adxp8x"))
-             (patches (list (search-patch "libffi-mips-n32-fix.patch")))))
+               "1sznmrhcswwbyqla9y2ximlkzbxks59wjfs3lh7qf8ayranyxzlp"))))
     (build-system gnu-build-system)
     (arguments `(#:phases (alist-cons-after 'install 'post-install
                                             ,post-install-phase
diff --git a/gnu/packages/patches/libffi-mips-n32-fix.patch b/gnu/packages/patches/libffi-mips-n32-fix.patch
deleted file mode 100644
index 87ec48f88..000000000
--- a/gnu/packages/patches/libffi-mips-n32-fix.patch
+++ /dev/null
@@ -1,21 +0,0 @@
-Fix handling of uint32_t arguments on the MIPS N32 ABI.
-
-Patch by Mark H Weaver <mhw@netris.org>.
-
---- libffi/src/mips/ffi.c.orig	2013-03-16 07:19:39.000000000 -0400
-+++ libffi/src/mips/ffi.c	2013-10-22 01:11:03.111985247 -0400
-@@ -170,7 +170,14 @@
- 		break;
- 		  
- 	      case FFI_TYPE_UINT32:
-+#ifdef FFI_MIPS_N32
-+		/* The N32 ABI requires that 32-bit integers
-+		   be sign-extended to 64-bits, regardless of
-+		   whether they are signed or unsigned. */
-+		*(ffi_arg *)argp = *(SINT32 *)(* p_argv);
-+#else
- 		*(ffi_arg *)argp = *(UINT32 *)(* p_argv);
-+#endif
- 		break;
- 
- 	      /* This can only happen with 64bit slots.  */
-- 
cgit v1.3


From cba95006a6129ffe2a29ff9f4ad10549214114a0 Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Wed, 20 Aug 2014 01:44:50 -0400
Subject: gnu: guile-2.0: Make 'bash' an input unconditionally.

* gnu/packages/guile.scm (guile-2.0): Make 'bash' an input
  unconditionally.
---
 gnu/packages/guile.scm | 6 +-----
 1 file changed, 1 insertion(+), 5 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/guile.scm b/gnu/packages/guile.scm
index 16e96848d..8433b5126 100644
--- a/gnu/packages/guile.scm
+++ b/gnu/packages/guile.scm
@@ -121,11 +121,7 @@ without requiring the source code to be rewritten.")
    (native-inputs `(("pkgconfig" ,pkg-config)))
    (inputs `(("libffi" ,libffi)
              ("readline" ,readline)
-
-             ;; TODO: On next core-updates, make Bash input unconditional.
-             ,@(if (%current-target-system)
-                   `(("bash" ,bash))
-                   '())))
+             ("bash" ,bash)))
 
    (propagated-inputs
     `( ;; These ones aren't normally needed here, but since `libguile-2.0.la'
-- 
cgit v1.3


From 06a70dbec116efaf70ee29341921197496b06139 Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Wed, 20 Aug 2014 04:04:11 -0400
Subject: gnu: gnutls: Update to 3.2.16.

* gnu/packages/gnutls.scm (gnutls): Update to 3.2.16.  Remove
  -DENABLE_RSA_EXPORT workaround.
---
 gnu/packages/gnutls.scm | 8 ++------
 1 file changed, 2 insertions(+), 6 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/gnutls.scm b/gnu/packages/gnutls.scm
index 03b21c169..9b91a311a 100644
--- a/gnu/packages/gnutls.scm
+++ b/gnu/packages/gnutls.scm
@@ -63,7 +63,7 @@ specifications.")
 (define-public gnutls
   (package
     (name "gnutls")
-    (version "3.2.15")
+    (version "3.2.16")
     (source (origin
              (method url-fetch)
              (uri
@@ -75,12 +75,8 @@ specifications.")
                              "/gnutls-" version ".tar.xz"))
              (sha256
               (base32
-               "1fbpr9r1r2y803s3avwjpy1higqsz85dyb302kvmh0i29frwgg9h"))))
+               "1bmwhg8y3mz5w2klclf5dz9502477kaj8r8db7k45fwb9ah3c63q"))))
     (build-system gnu-build-system)
-    (arguments
-     ;; Work around build issue reported at
-     ;; <https://lists.gnu.org/archive/html/guix-devel/2014-03/msg00027.html>.
-     '(#:make-flags '("CPPFLAGS=-DENABLE_RSA_EXPORT")))
     (native-inputs
      `(("pkg-config" ,pkg-config)))
     (inputs
-- 
cgit v1.3


From c3114b756760ddb73054a4bc3d5eff0bfe47c4de Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Wed, 20 Aug 2014 12:13:44 -0400
Subject: gnu: Add 'file' as a native-input on MIPS for some packages.

* gnu/packages/admin.scm (sudo):
  gnu/packages/gawk.scm (gawk): Add 'file' as a native input on MIPS.
  Remove earlier workaround on MIPS.

* gnu/packages/libffi.scm (libffi):
  gnu/packages/bdw-gc.scm (libatomic-ops, libgc): Add 'file' as a
  native input on MIPS.
---
 gnu/packages/admin.scm  | 20 ++++++++------------
 gnu/packages/bdw-gc.scm | 15 ++++++++++++++-
 gnu/packages/gawk.scm   | 19 +++++++------------
 gnu/packages/libffi.scm |  8 ++++++++
 4 files changed, 37 insertions(+), 25 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index c2599746d..83b01808c 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -29,6 +29,7 @@
   #:use-module (guix build-system trivial)
   #:use-module (gnu packages)
   #:use-module (gnu packages base)
+  #:use-module (gnu packages file)
   #:use-module (gnu packages ncurses)
   #:use-module (gnu packages readline)
   #:use-module (gnu packages linux)
@@ -648,18 +649,7 @@ system administrator.")
                       "")
                      (("^install: (.*)install-sudoers(.*)" _ before after)
                       ;; Don't try to create /etc/sudoers.
-                      (string-append "install: " before after "\n")))
-
-                   ;; XXX FIXME sudo 1.8.10p3 was bootstrapped with a
-                   ;; prerelease libtool, which fails on MIPS in the absence
-                   ;; of /usr/bin/file.  As a temporary workaround, we patch
-                   ;; the configure script to hardcode use of the little
-                   ;; endian N32 ABI on MIPS.
-                   ,@(if (equal? "mips64el-linux" (or (%current-target-system)
-                                                      (%current-system)))
-                         '((substitute* "configure"
-                             (("\\$emul") "elf32ltsmipn32")))
-                         '()))
+                      (string-append "install: " before after "\n"))))
                  %standard-phases)
 
        ;; XXX: The 'testsudoers' test series expects user 'root' to exist, but
@@ -669,6 +659,12 @@ system administrator.")
      `(("groff" ,groff)
        ("linux-pam" ,linux-pam)
        ("coreutils" ,coreutils)))
+    (native-inputs
+     `(;; 'file' is needed by the pre-release libtool on MIPS.
+       ,@(if (equal? "mips64el-linux" (or (%current-target-system)
+                                          (%current-system)))
+             `(("file" ,file))
+             '())))
     (home-page "http://www.sudo.ws/")
     (synopsis "Run commands as root")
     (description
diff --git a/gnu/packages/bdw-gc.scm b/gnu/packages/bdw-gc.scm
index df7cd1b48..e68ca50b5 100644
--- a/gnu/packages/bdw-gc.scm
+++ b/gnu/packages/bdw-gc.scm
@@ -22,6 +22,7 @@
   #:use-module (guix packages)
   #:use-module (guix download)
   #:use-module (guix build-system gnu)
+  #:use-module (gnu packages file)
   #:use-module (gnu packages pkg-config))
 
 (define-public libgc-7.2
@@ -75,6 +76,12 @@ C or C++ programs, though that is not its primary goal.")
                (base32
                 "1pdm0h1y7bgkczr8byg20r6bq15m5072cqm5pny4f9crc9gn3yh4"))))
     (build-system gnu-build-system)
+    (native-inputs
+     `(;; 'file' is needed by the pre-release libtool on MIPS.
+       ,@(if (equal? "mips64el-linux" (or (%current-target-system)
+                                          (%current-system)))
+             `(("file" ,file))
+             '())))
     (outputs '("out" "debug"))
     (synopsis "Accessing hardware atomic memory update operations")
     (description
@@ -99,7 +106,13 @@ lock-free code, experiment with thread programming paradigms, etc.")
                 "18mg28rr6kwr5clc65k4l4hkyy4kd16amx831sjf8q2lqkbhlck3"))))
 
     ;; New dependencies.
-    (native-inputs `(("pkg-config" ,pkg-config)))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)
+       ;; 'file' is needed by the pre-release libtool on MIPS.
+       ,@(if (equal? "mips64el-linux" (or (%current-target-system)
+                                          (%current-system)))
+             `(("file" ,file))
+             '())))
     (inputs `(("libatomic-ops" ,libatomic-ops)))
 
     ;; 'USE_LIBC_PRIVATES' is now the default.
diff --git a/gnu/packages/gawk.scm b/gnu/packages/gawk.scm
index 6185409fb..737e610ae 100644
--- a/gnu/packages/gawk.scm
+++ b/gnu/packages/gawk.scm
@@ -20,6 +20,7 @@
 (define-module (gnu packages gawk)
   #:use-module (guix licenses)
   #:use-module (gnu packages bash)
+  #:use-module (gnu packages file)
   #:use-module (gnu packages libsigsegv)
   #:use-module (guix packages)
   #:use-module (guix download)
@@ -55,17 +56,6 @@
                           '((substitute* "extension/Makefile.in"
                               (("^.*: check-for-shared-lib-support" match)
                                (string-append "### " match))))
-                          '())
-
-                    ;; XXX FIXME gawk 4.1.1 was bootstrapped with a prerelease
-                    ;; libtool, which fails on MIPS in the absence of
-                    ;; /usr/bin/file.  As a temporary workaround, we patch
-                    ;; the configure script to hardcode use of the little
-                    ;; endian N32 ABI on MIPS.
-                    ,@(if (equal? "mips64el-linux" (or (%current-target-system)
-                                                       (%current-system)))
-                          '((substitute* "extension/configure"
-                              (("\\$emul") "elf32ltsmipn32")))
                           '())))
                 %standard-phases)))
    (inputs `(("libsigsegv" ,libsigsegv)
@@ -73,7 +63,12 @@
              ,@(if (%current-target-system)
                    `(("bash" ,bash))
                    '())))
-
+   (native-inputs
+    `(;; 'file' is needed by the pre-release libtool on MIPS.
+      ,@(if (equal? "mips64el-linux" (or (%current-target-system)
+                                         (%current-system)))
+            `(("file" ,file))
+            '())))
    (home-page "http://www.gnu.org/software/gawk/")
    (synopsis "A text scanning and processing language")
    (description
diff --git a/gnu/packages/libffi.scm b/gnu/packages/libffi.scm
index 33e10d6fc..067838f8e 100644
--- a/gnu/packages/libffi.scm
+++ b/gnu/packages/libffi.scm
@@ -1,5 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2012, 2013, 2014 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2014 Mark H Weaver <mhw@netris.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -18,6 +19,7 @@
 
 (define-module (gnu packages libffi)
   #:use-module (gnu packages)
+  #:use-module (gnu packages file)
   #:use-module (guix licenses)
   #:use-module (guix packages)
   #:use-module (guix download)
@@ -43,6 +45,12 @@
               (base32
                "1sznmrhcswwbyqla9y2ximlkzbxks59wjfs3lh7qf8ayranyxzlp"))))
     (build-system gnu-build-system)
+    (native-inputs
+     `(;; 'file' is needed by the pre-release libtool on MIPS.
+       ,@(if (equal? "mips64el-linux" (or (%current-target-system)
+                                          (%current-system)))
+             `(("file" ,file))
+             '())))
     (arguments `(#:phases (alist-cons-after 'install 'post-install
                                             ,post-install-phase
                                             %standard-phases)))
-- 
cgit v1.3


From fa5731baabdb4a9240aad2154847f352aed02d6e Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Thu, 21 Aug 2014 21:49:36 -0400
Subject: Revert "gnu: Add 'file' as a native-input on MIPS for some packages."

This reverts commit c3114b756760ddb73054a4bc3d5eff0bfe47c4de.
---
 gnu/packages/admin.scm  | 20 ++++++++++++--------
 gnu/packages/bdw-gc.scm | 15 +--------------
 gnu/packages/gawk.scm   | 19 ++++++++++++-------
 gnu/packages/libffi.scm |  8 --------
 4 files changed, 25 insertions(+), 37 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index 83b01808c..c2599746d 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -29,7 +29,6 @@
   #:use-module (guix build-system trivial)
   #:use-module (gnu packages)
   #:use-module (gnu packages base)
-  #:use-module (gnu packages file)
   #:use-module (gnu packages ncurses)
   #:use-module (gnu packages readline)
   #:use-module (gnu packages linux)
@@ -649,7 +648,18 @@ system administrator.")
                       "")
                      (("^install: (.*)install-sudoers(.*)" _ before after)
                       ;; Don't try to create /etc/sudoers.
-                      (string-append "install: " before after "\n"))))
+                      (string-append "install: " before after "\n")))
+
+                   ;; XXX FIXME sudo 1.8.10p3 was bootstrapped with a
+                   ;; prerelease libtool, which fails on MIPS in the absence
+                   ;; of /usr/bin/file.  As a temporary workaround, we patch
+                   ;; the configure script to hardcode use of the little
+                   ;; endian N32 ABI on MIPS.
+                   ,@(if (equal? "mips64el-linux" (or (%current-target-system)
+                                                      (%current-system)))
+                         '((substitute* "configure"
+                             (("\\$emul") "elf32ltsmipn32")))
+                         '()))
                  %standard-phases)
 
        ;; XXX: The 'testsudoers' test series expects user 'root' to exist, but
@@ -659,12 +669,6 @@ system administrator.")
      `(("groff" ,groff)
        ("linux-pam" ,linux-pam)
        ("coreutils" ,coreutils)))
-    (native-inputs
-     `(;; 'file' is needed by the pre-release libtool on MIPS.
-       ,@(if (equal? "mips64el-linux" (or (%current-target-system)
-                                          (%current-system)))
-             `(("file" ,file))
-             '())))
     (home-page "http://www.sudo.ws/")
     (synopsis "Run commands as root")
     (description
diff --git a/gnu/packages/bdw-gc.scm b/gnu/packages/bdw-gc.scm
index e68ca50b5..df7cd1b48 100644
--- a/gnu/packages/bdw-gc.scm
+++ b/gnu/packages/bdw-gc.scm
@@ -22,7 +22,6 @@
   #:use-module (guix packages)
   #:use-module (guix download)
   #:use-module (guix build-system gnu)
-  #:use-module (gnu packages file)
   #:use-module (gnu packages pkg-config))
 
 (define-public libgc-7.2
@@ -76,12 +75,6 @@ C or C++ programs, though that is not its primary goal.")
                (base32
                 "1pdm0h1y7bgkczr8byg20r6bq15m5072cqm5pny4f9crc9gn3yh4"))))
     (build-system gnu-build-system)
-    (native-inputs
-     `(;; 'file' is needed by the pre-release libtool on MIPS.
-       ,@(if (equal? "mips64el-linux" (or (%current-target-system)
-                                          (%current-system)))
-             `(("file" ,file))
-             '())))
     (outputs '("out" "debug"))
     (synopsis "Accessing hardware atomic memory update operations")
     (description
@@ -106,13 +99,7 @@ lock-free code, experiment with thread programming paradigms, etc.")
                 "18mg28rr6kwr5clc65k4l4hkyy4kd16amx831sjf8q2lqkbhlck3"))))
 
     ;; New dependencies.
-    (native-inputs
-     `(("pkg-config" ,pkg-config)
-       ;; 'file' is needed by the pre-release libtool on MIPS.
-       ,@(if (equal? "mips64el-linux" (or (%current-target-system)
-                                          (%current-system)))
-             `(("file" ,file))
-             '())))
+    (native-inputs `(("pkg-config" ,pkg-config)))
     (inputs `(("libatomic-ops" ,libatomic-ops)))
 
     ;; 'USE_LIBC_PRIVATES' is now the default.
diff --git a/gnu/packages/gawk.scm b/gnu/packages/gawk.scm
index 737e610ae..6185409fb 100644
--- a/gnu/packages/gawk.scm
+++ b/gnu/packages/gawk.scm
@@ -20,7 +20,6 @@
 (define-module (gnu packages gawk)
   #:use-module (guix licenses)
   #:use-module (gnu packages bash)
-  #:use-module (gnu packages file)
   #:use-module (gnu packages libsigsegv)
   #:use-module (guix packages)
   #:use-module (guix download)
@@ -56,6 +55,17 @@
                           '((substitute* "extension/Makefile.in"
                               (("^.*: check-for-shared-lib-support" match)
                                (string-append "### " match))))
+                          '())
+
+                    ;; XXX FIXME gawk 4.1.1 was bootstrapped with a prerelease
+                    ;; libtool, which fails on MIPS in the absence of
+                    ;; /usr/bin/file.  As a temporary workaround, we patch
+                    ;; the configure script to hardcode use of the little
+                    ;; endian N32 ABI on MIPS.
+                    ,@(if (equal? "mips64el-linux" (or (%current-target-system)
+                                                       (%current-system)))
+                          '((substitute* "extension/configure"
+                              (("\\$emul") "elf32ltsmipn32")))
                           '())))
                 %standard-phases)))
    (inputs `(("libsigsegv" ,libsigsegv)
@@ -63,12 +73,7 @@
              ,@(if (%current-target-system)
                    `(("bash" ,bash))
                    '())))
-   (native-inputs
-    `(;; 'file' is needed by the pre-release libtool on MIPS.
-      ,@(if (equal? "mips64el-linux" (or (%current-target-system)
-                                         (%current-system)))
-            `(("file" ,file))
-            '())))
+
    (home-page "http://www.gnu.org/software/gawk/")
    (synopsis "A text scanning and processing language")
    (description
diff --git a/gnu/packages/libffi.scm b/gnu/packages/libffi.scm
index 067838f8e..33e10d6fc 100644
--- a/gnu/packages/libffi.scm
+++ b/gnu/packages/libffi.scm
@@ -1,6 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2012, 2013, 2014 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2014 Mark H Weaver <mhw@netris.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -19,7 +18,6 @@
 
 (define-module (gnu packages libffi)
   #:use-module (gnu packages)
-  #:use-module (gnu packages file)
   #:use-module (guix licenses)
   #:use-module (guix packages)
   #:use-module (guix download)
@@ -45,12 +43,6 @@
               (base32
                "1sznmrhcswwbyqla9y2ximlkzbxks59wjfs3lh7qf8ayranyxzlp"))))
     (build-system gnu-build-system)
-    (native-inputs
-     `(;; 'file' is needed by the pre-release libtool on MIPS.
-       ,@(if (equal? "mips64el-linux" (or (%current-target-system)
-                                          (%current-system)))
-             `(("file" ,file))
-             '())))
     (arguments `(#:phases (alist-cons-after 'install 'post-install
                                             ,post-install-phase
                                             %standard-phases)))
-- 
cgit v1.3


From 8f5708c1d8fbdc9065b8968d0112f7ee40d8dc97 Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Thu, 21 Aug 2014 11:26:40 -0400
Subject: gnu: bootstrap: Add 'file' to %boot0-inputs and %final-inputs.

* gnu/packages/base.scm (file-boot0): New variable.
  (%boot0-inputs): Add 'file-boot0'.
  (%final-inputs): Add 'file' to list of packages to 'finalize'.
---
 gnu/packages/base.scm | 11 +++++++++++
 1 file changed, 11 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/base.scm b/gnu/packages/base.scm
index 8060ab693..30176cfdd 100644
--- a/gnu/packages/base.scm
+++ b/gnu/packages/base.scm
@@ -29,6 +29,7 @@
   #:use-module (gnu packages compression)
   #:use-module (gnu packages gcc)
   #:use-module (gnu packages ed)
+  #:use-module (gnu packages file)
   #:use-module (gnu packages gawk)
   #:use-module (gnu packages guile)
   #:use-module (gnu packages multiprecision)
@@ -630,11 +631,20 @@ and daylight-saving rules.")
                                  (current-source-location)
                                  #:guile %bootstrap-guile)))
 
+(define file-boot0
+  (package-with-bootstrap-guile
+   (package-with-explicit-inputs file
+                                 `(("make" ,gnu-make-boot0)
+                                   ,@%bootstrap-inputs)
+                                 (current-source-location)
+                                 #:guile %bootstrap-guile)))
+
 
 (define %boot0-inputs
   `(("make" ,gnu-make-boot0)
     ("diffutils" ,diffutils-boot0)
     ("findutils" ,findutils-boot0)
+    ("file" ,file-boot0)
     ,@%bootstrap-inputs))
 
 (define* (nix-system->gnu-triplet
@@ -1187,6 +1197,7 @@ store.")
                ("gzip" ,gzip)
                ("bzip2" ,bzip2)
                ("xz" ,xz)
+               ("file" ,file)
                ("diffutils" ,diffutils)
                ("patch" ,patch)
                ("sed" ,sed)
-- 
cgit v1.3


From c198872b99cdb1e483ecb91cce4026bc9e35ac8a Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Thu, 21 Aug 2014 22:39:18 -0400
Subject: gnu: Rely on 'file' implicit input and 'patch-usr-bin-file'.

* gnu/packages/admin.scm (sudo):
* gnu/packages/gawk.scm (gawk): Remove workaround on MIPS.

* gnu/packages/mcrypt.scm (mcrypt, libmhash):
* gnu/packages/file.scm (file): Remove 'file' from native-inputs.

* gnu/packages/mc.scm (mc):
* gnu/packages/pretty-print.scm (a2ps, trueprint, source-highlight):
* gnu/packages/image.scm (libtiff): Remove 'file' from native-inputs.
  Remove 'patch-configure' phase.
---
 gnu/packages/admin.scm        |  13 +----
 gnu/packages/file.scm         |   3 --
 gnu/packages/gawk.scm         |  11 -----
 gnu/packages/image.scm        |  12 +----
 gnu/packages/mc.scm           |  11 +----
 gnu/packages/mcrypt.scm       |   7 +--
 gnu/packages/pretty-print.scm | 112 +++++++++++++++++-------------------------
 7 files changed, 51 insertions(+), 118 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index c2599746d..4d60c1798 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -648,18 +648,7 @@ system administrator.")
                       "")
                      (("^install: (.*)install-sudoers(.*)" _ before after)
                       ;; Don't try to create /etc/sudoers.
-                      (string-append "install: " before after "\n")))
-
-                   ;; XXX FIXME sudo 1.8.10p3 was bootstrapped with a
-                   ;; prerelease libtool, which fails on MIPS in the absence
-                   ;; of /usr/bin/file.  As a temporary workaround, we patch
-                   ;; the configure script to hardcode use of the little
-                   ;; endian N32 ABI on MIPS.
-                   ,@(if (equal? "mips64el-linux" (or (%current-target-system)
-                                                      (%current-system)))
-                         '((substitute* "configure"
-                             (("\\$emul") "elf32ltsmipn32")))
-                         '()))
+                      (string-append "install: " before after "\n"))))
                  %standard-phases)
 
        ;; XXX: The 'testsudoers' test series expects user 'root' to exist, but
diff --git a/gnu/packages/file.scm b/gnu/packages/file.scm
index f53c22f4c..067f20e67 100644
--- a/gnu/packages/file.scm
+++ b/gnu/packages/file.scm
@@ -35,9 +35,6 @@
             (sha256 (base32
                      "01xz106biz6x4h5ilymg5v3367djvgnfp4lm87132cjqdmqgn6b5"))))
    (build-system gnu-build-system)
-   (native-inputs
-    ;; This package depends upon a native install of itself.
-     (if (%current-target-system) `(("file" ,file)) '() ))
    (synopsis "file, a file type guesser")
    (description
     "The file command is a file type guesser, a command-line tool that tells
diff --git a/gnu/packages/gawk.scm b/gnu/packages/gawk.scm
index 6185409fb..fd14b4c83 100644
--- a/gnu/packages/gawk.scm
+++ b/gnu/packages/gawk.scm
@@ -55,17 +55,6 @@
                           '((substitute* "extension/Makefile.in"
                               (("^.*: check-for-shared-lib-support" match)
                                (string-append "### " match))))
-                          '())
-
-                    ;; XXX FIXME gawk 4.1.1 was bootstrapped with a prerelease
-                    ;; libtool, which fails on MIPS in the absence of
-                    ;; /usr/bin/file.  As a temporary workaround, we patch
-                    ;; the configure script to hardcode use of the little
-                    ;; endian N32 ABI on MIPS.
-                    ,@(if (equal? "mips64el-linux" (or (%current-target-system)
-                                                       (%current-system)))
-                          '((substitute* "extension/configure"
-                              (("\\$emul") "elf32ltsmipn32")))
                           '())))
                 %standard-phases)))
    (inputs `(("libsigsegv" ,libsigsegv)
diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm
index 014266cbb..06f62715c 100644
--- a/gnu/packages/image.scm
+++ b/gnu/packages/image.scm
@@ -19,7 +19,6 @@
 (define-module (gnu packages image)
   #:use-module (gnu packages)
   #:use-module (gnu packages compression)
-  #:use-module (gnu packages file)
   #:use-module ((guix licenses) #:renamer (symbol-prefix-proc 'license:))
   #:use-module (guix packages)
   #:use-module (guix download)
@@ -97,20 +96,11 @@ image files in PBMPLUS PPM/PGM, GIF, BMP, and Targa file formats.")
    (inputs `(("zlib" ,zlib)
              ("libjpeg-8" ,libjpeg-8)))
              ;; currently does not compile with libjpeg version 9
-   (native-inputs `(("file" ,file)))
    (arguments
     `(#:configure-flags
       (list (string-append "--with-jpeg-include-dir="
                            (assoc-ref %build-inputs "libjpeg-8")
-                           "/include"))
-      #:phases
-      (alist-cons-before
-       'configure 'patch-configure
-       (lambda _
-         (substitute* "configure"
-           (("`/usr/bin/file")
-            (string-append "`" (which "file")))))
-      %standard-phases)))
+                           "/include"))))
    (synopsis "Libtiff, a library for handling TIFF files")
    (description
     "Libtiff provides support for the Tag Image File Format (TIFF), a format
diff --git a/gnu/packages/mc.scm b/gnu/packages/mc.scm
index aba14d59a..6e3747c94 100644
--- a/gnu/packages/mc.scm
+++ b/gnu/packages/mc.scm
@@ -28,7 +28,6 @@
   #:use-module (gnu packages ssh)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages check)
-  #:use-module (gnu packages file)
   #:use-module (gnu packages perl))
 
 (define-public mc
@@ -46,7 +45,6 @@
       (patches (list (search-patch "mc-fix-ncurses-build.patch")))))
     (build-system gnu-build-system)
     (native-inputs `(("pkg-config" ,pkg-config)
-                     ("file" ,file)
                      ("perl" ,perl)))
     (inputs `(("aspell" ,aspell)
               ("ncurses" ,ncurses)
@@ -55,14 +53,7 @@
               ("check" ,check)))
     (arguments
      `(#:configure-flags
-       '("--with-screen=ncurses" "--enable-aspell")
-       #:phases
-       (alist-cons-before
-        'configure 'patch-configure
-        (lambda _
-          (substitute* "configure"
-            (("/usr/bin/file") (which "file"))))
-        %standard-phases)))
+       '("--with-screen=ncurses" "--enable-aspell")))
     (home-page "http://www.midnight-commander.org")
     (synopsis "Graphical file manager")
     (description
diff --git a/gnu/packages/mcrypt.scm b/gnu/packages/mcrypt.scm
index eac8c72c5..12a482722 100644
--- a/gnu/packages/mcrypt.scm
+++ b/gnu/packages/mcrypt.scm
@@ -23,8 +23,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (gnu packages)
   #:use-module (gnu packages compression)
-  #:use-module (gnu packages perl)
-  #:use-module (gnu packages file))
+  #:use-module (gnu packages perl))
 
 (define-public mcrypt
   (package
@@ -68,7 +67,6 @@ them.")
        (base32
         "0gipgb939vy9m66d3k8il98rvvwczyaw2ixr8yn6icds9c3nrsz4"))))
     (build-system gnu-build-system)
-    (native-inputs `(("file" ,file)))
     (home-page "http://mcrypt.sourceforge.net/")
     (synopsis "Encryption algorithm library")
     (description
@@ -95,8 +93,7 @@ XTEA, 3WAY, TWOFISH, BLOWFISH, ARCFOUR, WAKE and more.")
       (patches (list (search-patch "mhash-keygen-test-segfault.patch")))))
     (build-system gnu-build-system)
     (native-inputs
-     `(("file" ,file)
-       ("perl" ,perl)))                 ;for tests
+     `(("perl" ,perl)))                 ;for tests
     (home-page "http://mhash.sourceforge.net/")
     (synopsis "Thread-safe hash library")
     (description
diff --git a/gnu/packages/pretty-print.scm b/gnu/packages/pretty-print.scm
index 8c51b54f1..07837eb1a 100644
--- a/gnu/packages/pretty-print.scm
+++ b/gnu/packages/pretty-print.scm
@@ -30,8 +30,7 @@
   #:use-module (gnu packages bison)
   #:use-module (gnu packages flex)
   #:use-module (gnu packages gperf)
-  #:use-module (gnu packages perl)
-  #:use-module (gnu packages file))
+  #:use-module (gnu packages perl))
 
 (define-public a2ps
   (package
@@ -53,45 +52,39 @@
        ("imagemagick" ,imagemagick)))
     (native-inputs
      `(("gperf" ,gperf)
-       ("perl" ,perl)
-       ("file" ,file)))
+       ("perl" ,perl)))
     (arguments
      '(#:phases (alist-cons-before
-                 'configure 'patch-configure
+                 'build 'patch-scripts
                  (lambda _
-                   (substitute* "configure"
-                     (("/usr/bin/file") (which "file"))))
+                   (substitute*
+                       '("afm/make_fonts_map.sh"
+                         "tests/defs"
+                         "tests/backup.tst"
+                         "tests/styles.tst")
+                     (("/bin/rm") (which "rm"))))
                  (alist-cons-before
-                  'build 'patch-scripts
-                  (lambda _
-                    (substitute*
-                        '("afm/make_fonts_map.sh"
-                          "tests/defs"
-                          "tests/backup.tst"
-                          "tests/styles.tst")
-                      (("/bin/rm") (which "rm"))))
-                  (alist-cons-before
-                   'check 'patch-test-files
-                   ;; Alternatively, we could unpatch the shebangs in tstfiles
-                   (lambda* (#:key inputs #:allow-other-keys)
-                     (let ((perl (assoc-ref inputs "perl")))
-                       (substitute* '("tests/ps-ref/includeres.ps"
-                                      "tests/gps-ref/includeres.ps")
-                         (("/usr/local/bin/perl")
-                          (string-append perl "/bin/perl"))))
-                     ;; Some of the reference postscript contain a 'version 3'
-                     ;; string that in inconsistent with the source text in the
-                     ;; tstfiles directory.  Erroneous search-and-replace?
-                     (substitute* '("tests/ps-ref/InsertBlock.ps"
-                                    "tests/gps-ref/InsertBlock.ps"
-                                    "tests/ps-ref/bookie.ps"
-                                    "tests/gps-ref/bookie.ps")
-                       (("version 3") "version 2"))
-                     (substitute* '("tests/ps-ref/psmandup.ps"
-                                    "tests/gps-ref/psmandup.ps")
-                       (("#! */bin/sh") (string-append
-                                         "#!" (which "sh")))))
-                   %standard-phases)))))
+                  'check 'patch-test-files
+                  ;; Alternatively, we could unpatch the shebangs in tstfiles
+                  (lambda* (#:key inputs #:allow-other-keys)
+                    (let ((perl (assoc-ref inputs "perl")))
+                      (substitute* '("tests/ps-ref/includeres.ps"
+                                     "tests/gps-ref/includeres.ps")
+                        (("/usr/local/bin/perl")
+                         (string-append perl "/bin/perl"))))
+                    ;; Some of the reference postscript contain a 'version 3'
+                    ;; string that in inconsistent with the source text in the
+                    ;; tstfiles directory.  Erroneous search-and-replace?
+                    (substitute* '("tests/ps-ref/InsertBlock.ps"
+                                   "tests/gps-ref/InsertBlock.ps"
+                                   "tests/ps-ref/bookie.ps"
+                                   "tests/gps-ref/bookie.ps")
+                      (("version 3") "version 2"))
+                    (substitute* '("tests/ps-ref/psmandup.ps"
+                                   "tests/gps-ref/psmandup.ps")
+                      (("#! */bin/sh") (string-append
+                                        "#!" (which "sh")))))
+                  %standard-phases))))
     (home-page "http://www.gnu.org/software/a2ps")
     (synopsis "Any file to PostScript, including pretty-printing")
     (description
@@ -115,16 +108,9 @@ special cases, such as pretty-printing \"--help\" output.")
        (base32
         "13rkc0fga10xyf56yy9dnq95zndnfadkhxflnp24skszj21y8jqh"))))
     (build-system gnu-build-system)
-    (native-inputs `(("file" ,file)))
     (arguments
      ;; Must define DIFF_CMD for tests to pass
-     '(#:configure-flags '("CPPFLAGS=-DDIFF_CMD=\\\"diff\\\"")
-       #:phases (alist-cons-before
-                 'configure 'patch-configure
-                 (lambda _
-                   (substitute* "configure"
-                     (("/usr/bin/file") (which "file"))))
-                 %standard-phases)))
+     '(#:configure-flags '("CPPFLAGS=-DDIFF_CMD=\\\"diff\\\"")))
     (home-page "http://www.gnu.org/software/trueprint")
     (synopsis "Pretty-print C sources and other plain text to PostScript")
     (description
@@ -178,34 +164,28 @@ different programming languages.")
      `(("boost" ,boost)))
     (native-inputs
      `(("bison" ,bison)
-       ("flex" ,flex)
-       ("file" ,file)))
+       ("flex" ,flex)))
     (arguments
      `(#:configure-flags
        (list (string-append "--with-boost="
                             (assoc-ref %build-inputs "boost")))
        #:parallel-tests? #f             ;There appear to be race conditions
        #:phases (alist-cons-before
-                 'configure 'patch-configure
+                 'check 'patch-test-files
                  (lambda _
-                   (substitute* "configure"
-                     (("/usr/bin/file") (which "file"))))
-                 (alist-cons-before
-                  'check 'patch-test-files
-                  (lambda _
-                    ;; Unpatch shebangs in test input so that source-highlight
-                    ;; is still able to infer input language
-                    (substitute* '("tests/test.sh"
-                                   "tests/test2.sh"
-                                   "tests/test.tcl")
-                      (((string-append "#! *" (which "sh"))) "#!/bin/sh"))
-                    ;; Initial patching unrecoverably removes whitespace, so
-                    ;; remove it also in the comparison output.
-                    (substitute* '("tests/test.sh.html"
-                                   "tests/test2.sh.html"
-                                   "tests/test.tcl.html")
-                      (("#! */bin/sh") "#!/bin/sh")))
-                  %standard-phases))))
+                   ;; Unpatch shebangs in test input so that source-highlight
+                   ;; is still able to infer input language
+                   (substitute* '("tests/test.sh"
+                                  "tests/test2.sh"
+                                  "tests/test.tcl")
+                     (((string-append "#! *" (which "sh"))) "#!/bin/sh"))
+                   ;; Initial patching unrecoverably removes whitespace, so
+                   ;; remove it also in the comparison output.
+                   (substitute* '("tests/test.sh.html"
+                                  "tests/test2.sh.html"
+                                  "tests/test.tcl.html")
+                     (("#! */bin/sh") "#!/bin/sh")))
+                 %standard-phases)))
     (home-page "http://www.gnu.org/software/src-highlite")
     (synopsis "Produce a document with syntax highlighting from a source file")
     (description
-- 
cgit v1.3


From bc0506f5b75812431e8530e213ca642028743f9e Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Sat, 23 Aug 2014 20:48:28 -0400
Subject: gnu: libgcrypt: Update to 1.6.2.

* gnu/packages/gnupg.scm (libgcrypt): Update to 1.6.2.
---
 gnu/packages/gnupg.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/gnupg.scm b/gnu/packages/gnupg.scm
index 3207c74b0..326a321ca 100644
--- a/gnu/packages/gnupg.scm
+++ b/gnu/packages/gnupg.scm
@@ -63,14 +63,14 @@ Daemon and possibly more in the future.")
 (define-public libgcrypt
   (package
     (name "libgcrypt")
-    (version "1.6.1")
+    (version "1.6.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://gnupg/libgcrypt/libgcrypt-"
                                  version ".tar.bz2"))
              (sha256
               (base32
-               "0w10vhpj1r5nq7qm6jp21p1v1vhf37701cw8yilygzzqd7mfzhx1"))))
+               "0k2wi34qhp5hq71w1ab3kw1gfsx7xff79bvynqkxp35kls94826y"))))
     (build-system gnu-build-system)
     (propagated-inputs
      `(("libgpg-error" ,libgpg-error)))
-- 
cgit v1.3


From 48abd130217bd1645fefc4ca1817862672c6d782 Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Tue, 26 Aug 2014 12:00:26 -0400
Subject: gnu: file: Update to 5.19; add fix for CVE-2014-3587.

* gnu/packages/patches/file-CVE-2014-3587.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/file.scm (file): Update to 5.19.  Add patch.
---
 gnu-system.am                                 |  1 +
 gnu/packages/file.scm                         |  5 +++--
 gnu/packages/patches/file-CVE-2014-3587.patch | 16 ++++++++++++++++
 3 files changed, 20 insertions(+), 2 deletions(-)
 create mode 100644 gnu/packages/patches/file-CVE-2014-3587.patch

(limited to 'gnu')

diff --git a/gnu-system.am b/gnu-system.am
index 86937749c..f24da850c 100644
--- a/gnu-system.am
+++ b/gnu-system.am
@@ -299,6 +299,7 @@ dist_patch_DATA =						\
   gnu/packages/patches/doxygen-test.patch			\
   gnu/packages/patches/doxygen-tmake.patch			\
   gnu/packages/patches/emacs-configure-sh.patch			\
+  gnu/packages/patches/file-CVE-2014-3587.patch			\
   gnu/packages/patches/findutils-absolute-paths.patch		\
   gnu/packages/patches/flashrom-use-libftdi1.patch		\
   gnu/packages/patches/flex-bison-tests.patch			\
diff --git a/gnu/packages/file.scm b/gnu/packages/file.scm
index 067f20e67..601b15812 100644
--- a/gnu/packages/file.scm
+++ b/gnu/packages/file.scm
@@ -27,13 +27,14 @@
 (define-public file
   (package
    (name "file")
-   (version "5.18")
+   (version "5.19")
    (source (origin
             (method url-fetch)
             (uri (string-append "ftp://ftp.astron.com/pub/file/file-"
                    version ".tar.gz"))
             (sha256 (base32
-                     "01xz106biz6x4h5ilymg5v3367djvgnfp4lm87132cjqdmqgn6b5"))))
+                     "0z1sgrcfy6d285kj5izy1yypf371bjl3247plh9ppk0svaxv714l"))
+            (patches (list (search-patch "file-CVE-2014-3587.patch")))))
    (build-system gnu-build-system)
    (synopsis "file, a file type guesser")
    (description
diff --git a/gnu/packages/patches/file-CVE-2014-3587.patch b/gnu/packages/patches/file-CVE-2014-3587.patch
new file mode 100644
index 000000000..cf88bf5f3
--- /dev/null
+++ b/gnu/packages/patches/file-CVE-2014-3587.patch
@@ -0,0 +1,16 @@
+Fixes CVE-2014-3587.  Copied from upstream commit
+0641e56be1af003aa02c7c6b0184466540637233.
+
+--- file-5.19/src/cdf.c.orig	2014-06-09 09:04:37.000000000 -0400
++++ file-5.19/src/cdf.c	2014-08-26 11:55:23.887118898 -0400
+@@ -824,6 +824,10 @@
+ 		q = (const uint8_t *)(const void *)
+ 		    ((const char *)(const void *)p + ofs
+ 		    - 2 * sizeof(uint32_t));
++		if (q < p) {
++			DPRINTF(("Wrapped around %p < %p\n", q, p));
++			goto out;
++		}
+ 		if (q > e) {
+ 			DPRINTF(("Ran of the end %p > %p\n", q, e));
+ 			goto out;
-- 
cgit v1.3


From f5beb0caf31f227dbe3dd909ec318e84247a504a Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Tue, 26 Aug 2014 14:44:14 -0400
Subject: gnu: glibc: Fix CVE-2014-5119.

* gnu/packages/patches/glibc-CVE-2014-5119.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc): Add the patch.
---
 gnu-system.am                                  |   1 +
 gnu/packages/base.scm                          |   3 +-
 gnu/packages/patches/glibc-CVE-2014-5119.patch | 212 +++++++++++++++++++++++++
 3 files changed, 215 insertions(+), 1 deletion(-)
 create mode 100644 gnu/packages/patches/glibc-CVE-2014-5119.patch

(limited to 'gnu')

diff --git a/gnu-system.am b/gnu-system.am
index f24da850c..006fcab80 100644
--- a/gnu-system.am
+++ b/gnu-system.am
@@ -311,6 +311,7 @@ dist_patch_DATA =						\
   gnu/packages/patches/glib-tests-prlimit.patch			\
   gnu/packages/patches/glib-tests-timer.patch			\
   gnu/packages/patches/glibc-bootstrap-system.patch		\
+  gnu/packages/patches/glibc-CVE-2014-5119.patch		\
   gnu/packages/patches/glibc-ldd-x86_64.patch			\
   gnu/packages/patches/gnunet-fix-scheduler.patch		\
   gnu/packages/patches/gnunet-fix-tests.patch    		\
diff --git a/gnu/packages/base.scm b/gnu/packages/base.scm
index 30176cfdd..6f340172e 100644
--- a/gnu/packages/base.scm
+++ b/gnu/packages/base.scm
@@ -384,7 +384,8 @@ library for working with executable and object formats is also included.")
                 (("use_ldconfig=yes")
                  "use_ldconfig=no")))
             (modules '((guix build utils)))
-            (patches (list (search-patch "glibc-ldd-x86_64.patch")))))
+            (patches (list (search-patch "glibc-CVE-2014-5119.patch")
+                           (search-patch "glibc-ldd-x86_64.patch")))))
    (build-system gnu-build-system)
 
    ;; Glibc's <limits.h> refers to <linux/limit.h>, for instance, so glibc
diff --git a/gnu/packages/patches/glibc-CVE-2014-5119.patch b/gnu/packages/patches/glibc-CVE-2014-5119.patch
new file mode 100644
index 000000000..de063a2da
--- /dev/null
+++ b/gnu/packages/patches/glibc-CVE-2014-5119.patch
@@ -0,0 +1,212 @@
+Remove support for loadable gconv transliteration modules.
+The support for transliteration modules has been non-functional for
+over a decade, and the removal is prompted by security defects.  The
+normal gconv conversion modules are still supported.  Transliteration
+with //TRANSLIT is still possible, and the //IGNORE specifier
+continues to be  supported. (CVE-2014-5119)
+
+Based on upstream commits a1a6a401ab0a3c9f15fb7eaebbdcee24192254e8
+and f9df71e895d3552d557e783fdb9d133328195645
+by Florian Weimer <fweimer@redhat.com>.
+
+--- glibc-2.19/ChangeLog.orig	2014-02-07 04:04:38.000000000 -0500
++++ glibc-2.19/ChangeLog	2014-08-26 14:35:12.368861387 -0400
+@@ -1,3 +1,10 @@
++2014-08-26  Florian Weimer  <fweimer@redhat.com>
++
++	[BZ #17187]
++	* iconv/gconv_trans.c (struct known_trans, search_tree, lock,
++	trans_compare, open_translit, __gconv_translit_find):
++	Remove module loading code.
++
+ 2014-02-06  Carlos O'Donell  <carlos@redhat.com>
+ 
+ 	[BZ #16529]
+--- glibc-2.19/iconv/gconv_trans.c.orig	2014-02-07 04:04:38.000000000 -0500
++++ glibc-2.19/iconv/gconv_trans.c	2014-08-26 14:37:26.269525364 -0400
+@@ -238,181 +238,12 @@
+   return __GCONV_ILLEGAL_INPUT;
+ }
+ 
+-
+-/* Structure to represent results of found (or not) transliteration
+-   modules.  */
+-struct known_trans
+-{
+-  /* This structure must remain the first member.  */
+-  struct trans_struct info;
+-
+-  char *fname;
+-  void *handle;
+-  int open_count;
+-};
+-
+-
+-/* Tree with results of previous calls to __gconv_translit_find.  */
+-static void *search_tree;
+-
+-/* We modify global data.   */
+-__libc_lock_define_initialized (static, lock);
+-
+-
+-/* Compare two transliteration entries.  */
+-static int
+-trans_compare (const void *p1, const void *p2)
+-{
+-  const struct known_trans *s1 = (const struct known_trans *) p1;
+-  const struct known_trans *s2 = (const struct known_trans *) p2;
+-
+-  return strcmp (s1->info.name, s2->info.name);
+-}
+-
+-
+-/* Open (maybe reopen) the module named in the struct.  Get the function
+-   and data structure pointers we need.  */
+-static int
+-open_translit (struct known_trans *trans)
+-{
+-  __gconv_trans_query_fct queryfct;
+-
+-  trans->handle = __libc_dlopen (trans->fname);
+-  if (trans->handle == NULL)
+-    /* Not available.  */
+-    return 1;
+-
+-  /* Find the required symbol.  */
+-  queryfct = __libc_dlsym (trans->handle, "gconv_trans_context");
+-  if (queryfct == NULL)
+-    {
+-      /* We cannot live with that.  */
+-    close_and_out:
+-      __libc_dlclose (trans->handle);
+-      trans->handle = NULL;
+-      return 1;
+-    }
+-
+-  /* Get the context.  */
+-  if (queryfct (trans->info.name, &trans->info.csnames, &trans->info.ncsnames)
+-      != 0)
+-    goto close_and_out;
+-
+-  /* Of course we also have to have the actual function.  */
+-  trans->info.trans_fct = __libc_dlsym (trans->handle, "gconv_trans");
+-  if (trans->info.trans_fct == NULL)
+-    goto close_and_out;
+-
+-  /* Now the optional functions.  */
+-  trans->info.trans_init_fct =
+-    __libc_dlsym (trans->handle, "gconv_trans_init");
+-  trans->info.trans_context_fct =
+-    __libc_dlsym (trans->handle, "gconv_trans_context");
+-  trans->info.trans_end_fct =
+-    __libc_dlsym (trans->handle, "gconv_trans_end");
+-
+-  trans->open_count = 1;
+-
+-  return 0;
+-}
+-
+-
+ int
+ internal_function
+ __gconv_translit_find (struct trans_struct *trans)
+ {
+-  struct known_trans **found;
+-  const struct path_elem *runp;
+-  int res = 1;
+-
+-  /* We have to have a name.  */
+-  assert (trans->name != NULL);
+-
+-  /* Acquire the lock.  */
+-  __libc_lock_lock (lock);
+-
+-  /* See whether we know this module already.  */
+-  found = __tfind (trans, &search_tree, trans_compare);
+-  if (found != NULL)
+-    {
+-      /* Is this module available?  */
+-      if ((*found)->handle != NULL)
+-	{
+-	  /* Maybe we have to reopen the file.  */
+-	  if ((*found)->handle != (void *) -1)
+-	    /* The object is not unloaded.  */
+-	    res = 0;
+-	  else if (open_translit (*found) == 0)
+-	    {
+-	      /* Copy the data.  */
+-	      *trans = (*found)->info;
+-	      (*found)->open_count++;
+-	      res = 0;
+-	    }
+-	}
+-    }
+-  else
+-    {
+-      size_t name_len = strlen (trans->name) + 1;
+-      int need_so = 0;
+-      struct known_trans *newp;
+-
+-      /* We have to continue looking for the module.  */
+-      if (__gconv_path_elem == NULL)
+-	__gconv_get_path ();
+-
+-      /* See whether we have to append .so.  */
+-      if (name_len <= 4 || memcmp (&trans->name[name_len - 4], ".so", 3) != 0)
+-	need_so = 1;
+-
+-      /* Create a new entry.  */
+-      newp = (struct known_trans *) malloc (sizeof (struct known_trans)
+-					    + (__gconv_max_path_elem_len
+-					       + name_len + 3)
+-					    + name_len);
+-      if (newp != NULL)
+-	{
+-	  char *cp;
+-
+-	  /* Clear the struct.  */
+-	  memset (newp, '\0', sizeof (struct known_trans));
+-
+-	  /* Store a copy of the module name.  */
+-	  newp->info.name = cp = (char *) (newp + 1);
+-	  cp = __mempcpy (cp, trans->name, name_len);
+-
+-	  newp->fname = cp;
+-
+-	  /* Search in all the directories.  */
+-	  for (runp = __gconv_path_elem; runp->name != NULL; ++runp)
+-	    {
+-	      cp = __mempcpy (__stpcpy ((char *) newp->fname, runp->name),
+-			      trans->name, name_len);
+-	      if (need_so)
+-		memcpy (cp, ".so", sizeof (".so"));
+-
+-	      if (open_translit (newp) == 0)
+-		{
+-		  /* We found a module.  */
+-		  res = 0;
+-		  break;
+-		}
+-	    }
+-
+-	  if (res)
+-	    newp->fname = NULL;
+-
+-	  /* In any case we'll add the entry to our search tree.  */
+-	  if (__tsearch (newp, &search_tree, trans_compare) == NULL)
+-	    {
+-	      /* Yickes, this should not happen.  Unload the object.  */
+-	      res = 1;
+-	      /* XXX unload here.  */
+-	    }
+-	}
+-    }
+-
+-  __libc_lock_unlock (lock);
+-
+-  return res;
++  /* Transliteration module loading has been removed because it never
++     worked as intended and suffered from a security vulnerability.
++     Consequently, this function always fails.  */
++  return 1;
+ }
-- 
cgit v1.3


From b5ef82e064daeb8452fe269892778eaf98e986d5 Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Thu, 28 Aug 2014 15:34:17 -0400
Subject: gnu: Add missing import to (gnu packages base).

* gnu/packages/base.scm: Import (gnu packages base).
---
 gnu/packages/base.scm | 1 +
 1 file changed, 1 insertion(+)

(limited to 'gnu')

diff --git a/gnu/packages/base.scm b/gnu/packages/base.scm
index 38c6d4894..cbe115f8a 100644
--- a/gnu/packages/base.scm
+++ b/gnu/packages/base.scm
@@ -25,6 +25,7 @@
   #:use-module (gnu packages)
   #:use-module (gnu packages acl)
   #:use-module (gnu packages bash)
+  #:use-module (gnu packages ed)
   #:use-module (gnu packages guile)
   #:use-module (gnu packages multiprecision)
   #:use-module (gnu packages perl)
-- 
cgit v1.3


From 6646747c020402fd077a719af99627d9cf3fe54d Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Fri, 29 Aug 2014 18:28:50 -0400
Subject: gnu: gawk: Patch /usr/bin/file in extension/configure on MIPS.

* gnu/packages/gawk.scm (gawk): When building for MIPS, patch /usr/bin/file in
  extension/configure.
---
 gnu/packages/gawk.scm | 8 ++++++++
 1 file changed, 8 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/gawk.scm b/gnu/packages/gawk.scm
index fd14b4c83..84b5bd17a 100644
--- a/gnu/packages/gawk.scm
+++ b/gnu/packages/gawk.scm
@@ -55,6 +55,14 @@
                           '((substitute* "extension/Makefile.in"
                               (("^.*: check-for-shared-lib-support" match)
                                (string-append "### " match))))
+                          '())
+
+                    ;; XXX FIXME prerelease libtool fails on MIPS in the
+                    ;; absence of /usr/bin/file.
+                    ,@(if (equal? "mips64el-linux" (or (%current-target-system)
+                                                       (%current-system)))
+                          '((substitute* "extension/configure"
+                              (("/usr/bin/file") (which "file"))))
                           '())))
                 %standard-phases)))
    (inputs `(("libsigsegv" ,libsigsegv)
-- 
cgit v1.3


From 39ccbfad1c1b56c4866563a60676cb35b6a17871 Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Mon, 8 Sep 2014 11:05:45 -0400
Subject: gnu: glibc: Update to 2.20.

* gnu/packages/patches/glibc-CVE-2014-5119.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/base.scm (glibc): Update to 2.20.  Remove patch.
  Raise minimum linux version to 2.6.32.
---
 gnu-system.am                                  |   1 -
 gnu/packages/base.scm                          |  15 +-
 gnu/packages/patches/glibc-CVE-2014-5119.patch | 212 -------------------------
 3 files changed, 7 insertions(+), 221 deletions(-)
 delete mode 100644 gnu/packages/patches/glibc-CVE-2014-5119.patch

(limited to 'gnu')

diff --git a/gnu-system.am b/gnu-system.am
index 510a217b9..a079fa203 100644
--- a/gnu-system.am
+++ b/gnu-system.am
@@ -323,7 +323,6 @@ dist_patch_DATA =						\
   gnu/packages/patches/glib-tests-prlimit.patch			\
   gnu/packages/patches/glib-tests-timer.patch			\
   gnu/packages/patches/glibc-bootstrap-system.patch		\
-  gnu/packages/patches/glibc-CVE-2014-5119.patch		\
   gnu/packages/patches/glibc-ldd-x86_64.patch			\
   gnu/packages/patches/gnunet-fix-scheduler.patch		\
   gnu/packages/patches/gnunet-fix-tests.patch    		\
diff --git a/gnu/packages/base.scm b/gnu/packages/base.scm
index cbe115f8a..5ecff7625 100644
--- a/gnu/packages/base.scm
+++ b/gnu/packages/base.scm
@@ -357,14 +357,14 @@ library for working with executable and object formats is also included.")
 (define-public glibc
   (package
    (name "glibc")
-   (version "2.19")
+   (version "2.20")
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://gnu/glibc/glibc-"
                                 version ".tar.xz"))
             (sha256
              (base32
-              "18m2dssd6ja5arxmdxinc90xvpqcsnqjfwmjl2as07j0i3srff9d"))
+              "19bbyfc2gcxr9rihrkkbd3p362i608yhlyrr7icqsa6cmr16sjzq"))
             (snippet
              ;; Disable 'ldconfig' and /etc/ld.so.cache.  The latter is
              ;; required on LFS distros to avoid loading the distro's libc.so
@@ -373,8 +373,7 @@ library for working with executable and object formats is also included.")
                 (("use_ldconfig=yes")
                  "use_ldconfig=no")))
             (modules '((guix build utils)))
-            (patches (list (search-patch "glibc-CVE-2014-5119.patch")
-                           (search-patch "glibc-ldd-x86_64.patch")))))
+            (patches (list (search-patch "glibc-ldd-x86_64.patch")))))
    (build-system gnu-build-system)
 
    ;; Glibc's <limits.h> refers to <linux/limit.h>, for instance, so glibc
@@ -405,10 +404,10 @@ library for working with executable and object formats is also included.")
                            (assoc-ref %build-inputs "linux-headers")
                            "/include")
 
-            ;; The default is to assume a 2.4 Linux interface, but we'll
-            ;; always use something newer.  See "kernel-features.h" in the
-            ;; GNU libc for details.
-            "--enable-kernel=2.6.30"
+            ;; This is the default for most architectures as of GNU libc 2.20,
+            ;; but we specify it explicitly for clarity and consistency.  See
+            ;; "kernel-features.h" in the GNU libc for details.
+            "--enable-kernel=2.6.32"
 
             ;; Use our Bash instead of /bin/sh.
             (string-append "BASH_SHELL="
diff --git a/gnu/packages/patches/glibc-CVE-2014-5119.patch b/gnu/packages/patches/glibc-CVE-2014-5119.patch
deleted file mode 100644
index de063a2da..000000000
--- a/gnu/packages/patches/glibc-CVE-2014-5119.patch
+++ /dev/null
@@ -1,212 +0,0 @@
-Remove support for loadable gconv transliteration modules.
-The support for transliteration modules has been non-functional for
-over a decade, and the removal is prompted by security defects.  The
-normal gconv conversion modules are still supported.  Transliteration
-with //TRANSLIT is still possible, and the //IGNORE specifier
-continues to be  supported. (CVE-2014-5119)
-
-Based on upstream commits a1a6a401ab0a3c9f15fb7eaebbdcee24192254e8
-and f9df71e895d3552d557e783fdb9d133328195645
-by Florian Weimer <fweimer@redhat.com>.
-
---- glibc-2.19/ChangeLog.orig	2014-02-07 04:04:38.000000000 -0500
-+++ glibc-2.19/ChangeLog	2014-08-26 14:35:12.368861387 -0400
-@@ -1,3 +1,10 @@
-+2014-08-26  Florian Weimer  <fweimer@redhat.com>
-+
-+	[BZ #17187]
-+	* iconv/gconv_trans.c (struct known_trans, search_tree, lock,
-+	trans_compare, open_translit, __gconv_translit_find):
-+	Remove module loading code.
-+
- 2014-02-06  Carlos O'Donell  <carlos@redhat.com>
- 
- 	[BZ #16529]
---- glibc-2.19/iconv/gconv_trans.c.orig	2014-02-07 04:04:38.000000000 -0500
-+++ glibc-2.19/iconv/gconv_trans.c	2014-08-26 14:37:26.269525364 -0400
-@@ -238,181 +238,12 @@
-   return __GCONV_ILLEGAL_INPUT;
- }
- 
--
--/* Structure to represent results of found (or not) transliteration
--   modules.  */
--struct known_trans
--{
--  /* This structure must remain the first member.  */
--  struct trans_struct info;
--
--  char *fname;
--  void *handle;
--  int open_count;
--};
--
--
--/* Tree with results of previous calls to __gconv_translit_find.  */
--static void *search_tree;
--
--/* We modify global data.   */
--__libc_lock_define_initialized (static, lock);
--
--
--/* Compare two transliteration entries.  */
--static int
--trans_compare (const void *p1, const void *p2)
--{
--  const struct known_trans *s1 = (const struct known_trans *) p1;
--  const struct known_trans *s2 = (const struct known_trans *) p2;
--
--  return strcmp (s1->info.name, s2->info.name);
--}
--
--
--/* Open (maybe reopen) the module named in the struct.  Get the function
--   and data structure pointers we need.  */
--static int
--open_translit (struct known_trans *trans)
--{
--  __gconv_trans_query_fct queryfct;
--
--  trans->handle = __libc_dlopen (trans->fname);
--  if (trans->handle == NULL)
--    /* Not available.  */
--    return 1;
--
--  /* Find the required symbol.  */
--  queryfct = __libc_dlsym (trans->handle, "gconv_trans_context");
--  if (queryfct == NULL)
--    {
--      /* We cannot live with that.  */
--    close_and_out:
--      __libc_dlclose (trans->handle);
--      trans->handle = NULL;
--      return 1;
--    }
--
--  /* Get the context.  */
--  if (queryfct (trans->info.name, &trans->info.csnames, &trans->info.ncsnames)
--      != 0)
--    goto close_and_out;
--
--  /* Of course we also have to have the actual function.  */
--  trans->info.trans_fct = __libc_dlsym (trans->handle, "gconv_trans");
--  if (trans->info.trans_fct == NULL)
--    goto close_and_out;
--
--  /* Now the optional functions.  */
--  trans->info.trans_init_fct =
--    __libc_dlsym (trans->handle, "gconv_trans_init");
--  trans->info.trans_context_fct =
--    __libc_dlsym (trans->handle, "gconv_trans_context");
--  trans->info.trans_end_fct =
--    __libc_dlsym (trans->handle, "gconv_trans_end");
--
--  trans->open_count = 1;
--
--  return 0;
--}
--
--
- int
- internal_function
- __gconv_translit_find (struct trans_struct *trans)
- {
--  struct known_trans **found;
--  const struct path_elem *runp;
--  int res = 1;
--
--  /* We have to have a name.  */
--  assert (trans->name != NULL);
--
--  /* Acquire the lock.  */
--  __libc_lock_lock (lock);
--
--  /* See whether we know this module already.  */
--  found = __tfind (trans, &search_tree, trans_compare);
--  if (found != NULL)
--    {
--      /* Is this module available?  */
--      if ((*found)->handle != NULL)
--	{
--	  /* Maybe we have to reopen the file.  */
--	  if ((*found)->handle != (void *) -1)
--	    /* The object is not unloaded.  */
--	    res = 0;
--	  else if (open_translit (*found) == 0)
--	    {
--	      /* Copy the data.  */
--	      *trans = (*found)->info;
--	      (*found)->open_count++;
--	      res = 0;
--	    }
--	}
--    }
--  else
--    {
--      size_t name_len = strlen (trans->name) + 1;
--      int need_so = 0;
--      struct known_trans *newp;
--
--      /* We have to continue looking for the module.  */
--      if (__gconv_path_elem == NULL)
--	__gconv_get_path ();
--
--      /* See whether we have to append .so.  */
--      if (name_len <= 4 || memcmp (&trans->name[name_len - 4], ".so", 3) != 0)
--	need_so = 1;
--
--      /* Create a new entry.  */
--      newp = (struct known_trans *) malloc (sizeof (struct known_trans)
--					    + (__gconv_max_path_elem_len
--					       + name_len + 3)
--					    + name_len);
--      if (newp != NULL)
--	{
--	  char *cp;
--
--	  /* Clear the struct.  */
--	  memset (newp, '\0', sizeof (struct known_trans));
--
--	  /* Store a copy of the module name.  */
--	  newp->info.name = cp = (char *) (newp + 1);
--	  cp = __mempcpy (cp, trans->name, name_len);
--
--	  newp->fname = cp;
--
--	  /* Search in all the directories.  */
--	  for (runp = __gconv_path_elem; runp->name != NULL; ++runp)
--	    {
--	      cp = __mempcpy (__stpcpy ((char *) newp->fname, runp->name),
--			      trans->name, name_len);
--	      if (need_so)
--		memcpy (cp, ".so", sizeof (".so"));
--
--	      if (open_translit (newp) == 0)
--		{
--		  /* We found a module.  */
--		  res = 0;
--		  break;
--		}
--	    }
--
--	  if (res)
--	    newp->fname = NULL;
--
--	  /* In any case we'll add the entry to our search tree.  */
--	  if (__tsearch (newp, &search_tree, trans_compare) == NULL)
--	    {
--	      /* Yickes, this should not happen.  Unload the object.  */
--	      res = 1;
--	      /* XXX unload here.  */
--	    }
--	}
--    }
--
--  __libc_lock_unlock (lock);
--
--  return res;
-+  /* Transliteration module loading has been removed because it never
-+     worked as intended and suffered from a security vulnerability.
-+     Consequently, this function always fails.  */
-+  return 1;
- }
-- 
cgit v1.3


From da5538ef44bfa74d3e435f9f557374eabba5dc1e Mon Sep 17 00:00:00 2001
From: Mark H Weaver
Date: Mon, 8 Sep 2014 12:40:28 -0400
Subject: gnu: libunistring: Update to 0.9.4.

* gnu/packages/libunistring.scm (libunistring): Update to 0.9.4.
---
 gnu/packages/libunistring.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/libunistring.scm b/gnu/packages/libunistring.scm
index a7681009a..ddafd7420 100644
--- a/gnu/packages/libunistring.scm
+++ b/gnu/packages/libunistring.scm
@@ -25,7 +25,7 @@
 (define-public libunistring
   (package
    (name "libunistring")
-   (version "0.9.3")
+   (version "0.9.4")
    (source (origin
             (method url-fetch)
             (uri (string-append
@@ -33,7 +33,7 @@
                   version ".tar.gz"))
             (sha256
              (base32
-              "18q620269xzpw39dwvr9zpilnl2dkw5z5kz3mxaadnpv4k3kw3b1"))))
+              "19nqvn19hz25ig9dbmh2di5j1r7v852x9mlnq0nr0hka51ins97m"))))
    (propagated-inputs '())                  ; FIXME: add libiconv when !glibc
    (build-system gnu-build-system)
    (arguments
-- 
cgit v1.3


From 9d77da2a47ddb707edcbd1ca17f5c0ac3c068b04 Mon Sep 17 00:00:00 2001
From: Ludovic Courtès
Date: Fri, 12 Sep 2014 22:05:50 +0200
Subject: gnu: util-linux: Don't install 'logger'.

* gnu/packages/linux.scm (util-linux)[source]: Add 'snippet'.
---
 gnu/packages/linux.scm | 11 ++++++++++-
 1 file changed, 10 insertions(+), 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 7be0d076e..04d0458dc 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -378,7 +378,16 @@ providing the system administrator with some help in common tasks.")
               (sha256
                (base32
                 "1rpgghf7n0zx0cdy8hibr41wvkm2qp1yvd8ab1rxr193l1jmgcir"))
-              (patches (list (search-patch "util-linux-perl.patch")))))
+              (patches (list (search-patch "util-linux-perl.patch")))
+              (modules '((guix build utils)))
+              (snippet
+               ;; We take the 'logger' program from GNU Inetutils, so remove
+               ;; it from here.
+               '(substitute* "misc-utils/Makefile.in"
+                  (("PROGRAMS =(.*) logger(.*)" _ before after)
+                   (string-append "PROGRAMS =" before " " after))
+                  (("MANS =(.*) logger\\.1(.*)" _ before after)
+                   (string-append "MANS =" before " " after))))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags '("--disable-use-tty-group"
-- 
cgit v1.3


From 6904ecce5fdd25a9564050101f1003a4d75e7bd5 Mon Sep 17 00:00:00 2001
From: Ludovic Courtès
Date: Wed, 17 Sep 2014 17:17:43 +0200
Subject: gnu: gcc-4.8.3: Add patch for PR61801.

* gnu/packages/patches/gcc-fix-pr61801.patch: New file.
* gnu/packages/gcc.scm (gcc-4.8): Use it.
* gnu-system.am (dist_patch_DATA): Add it.
---
 gnu-system.am                              |  1 +
 gnu/packages/gcc.scm                       |  3 ++-
 gnu/packages/patches/gcc-fix-pr61801.patch | 25 +++++++++++++++++++++++++
 3 files changed, 28 insertions(+), 1 deletion(-)
 create mode 100644 gnu/packages/patches/gcc-fix-pr61801.patch

(limited to 'gnu')

diff --git a/gnu-system.am b/gnu-system.am
index 93afd9fb5..7d6763c5e 100644
--- a/gnu-system.am
+++ b/gnu-system.am
@@ -327,6 +327,7 @@ dist_patch_DATA =						\
   gnu/packages/patches/flex-bison-tests.patch			\
   gnu/packages/patches/gawk-shell.patch				\
   gnu/packages/patches/gcc-cross-environment-variables.patch	\
+  gnu/packages/patches/gcc-fix-pr61801.patch			\
   gnu/packages/patches/gd-mips64-deplibs-fix.patch		\
   gnu/packages/patches/glib-tests-desktop.patch			\
   gnu/packages/patches/glib-tests-homedir.patch			\
diff --git a/gnu/packages/gcc.scm b/gnu/packages/gcc.scm
index 66888389d..02601585b 100644
--- a/gnu/packages/gcc.scm
+++ b/gnu/packages/gcc.scm
@@ -268,7 +268,8 @@ Go.  It also includes runtime support libraries for these languages.")
                                  version "/gcc-" version ".tar.bz2"))
              (sha256
               (base32
-               "07hg10zs7gnqz58my10ch0zygizqh0z0bz6pv4pgxx45n48lz3ka"))))))
+               "07hg10zs7gnqz58my10ch0zygizqh0z0bz6pv4pgxx45n48lz3ka"))
+             (patches (list (search-patch "gcc-fix-pr61801.patch")))))))
 
 (define-public gcc-4.9
   (package (inherit gcc-4.7)
diff --git a/gnu/packages/patches/gcc-fix-pr61801.patch b/gnu/packages/patches/gcc-fix-pr61801.patch
new file mode 100644
index 000000000..e9cd92aa1
--- /dev/null
+++ b/gnu/packages/patches/gcc-fix-pr61801.patch
@@ -0,0 +1,25 @@
+GCC bug fix for <https://gcc.gnu.org/bugzilla/show_bug.cgi?id=61801>.
+Initially discussed at
+ <http://lists.gnu.org/archive/html/guix-devel/2014-09/msg00283.html>.
+Patch from <https://gcc.gnu.org/viewcvs/gcc?view=revision&revision=212740>.
+
+2014-07-17  Richard Biener  <rguenther@suse.de>
+
+        PR rtl-optimization/61801
+
+        * sched-deps.c (sched_analyze_2): For ASM_OPERANDS and
+        ASM_INPUT don't set reg_pending_barrier if it appears in a
+        debug-insn.
+
+--- gcc-4_8-branch/gcc/sched-deps.c	2014/07/17 07:48:49	212739
++++ gcc-4_8-branch/gcc/sched-deps.c	2014/07/17 07:49:44	212740
+@@ -2744,7 +2744,8 @@
+ 	   Consider for instance a volatile asm that changes the fpu rounding
+ 	   mode.  An insn should not be moved across this even if it only uses
+ 	   pseudo-regs because it might give an incorrectly rounded result.  */
+-	if (code != ASM_OPERANDS || MEM_VOLATILE_P (x))
++	if ((code != ASM_OPERANDS || MEM_VOLATILE_P (x))
++	    && !DEBUG_INSN_P (insn))
+ 	  reg_pending_barrier = TRUE_BARRIER;
+ 
+ 	/* For all ASM_OPERANDS, we must traverse the vector of input operands.
-- 
cgit v1.3


From dd68dd137a4a70cde7e344bd969ef7849355d018 Mon Sep 17 00:00:00 2001
From: Ludovic Courtès
Date: Sat, 20 Sep 2014 14:15:17 +0200
Subject: gnu: cyrus-sasl: Build sequentially.

* gnu/packages/cyrus-sasl.scm (cyrus-sasl)[arguments]: Pass
  #:parallel-build?.
---
 gnu/packages/cyrus-sasl.scm | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/cyrus-sasl.scm b/gnu/packages/cyrus-sasl.scm
index 1913f93f0..0c92cc36a 100644
--- a/gnu/packages/cyrus-sasl.scm
+++ b/gnu/packages/cyrus-sasl.scm
@@ -49,7 +49,13 @@
    (arguments
     '(#:configure-flags (list (string-append "--with-plugindir="
                                              (assoc-ref %outputs "out")
-                                             "/lib/sasl2"))))
+                                             "/lib/sasl2"))
+
+      ;; The 'plugins' directory has shared source files, such as
+      ;; 'plugin_common.c'.  When building the shared libraries there, libtool
+      ;; ends up doing "ln -s plugin_common.lo plugin_common.o", which can
+      ;; fail with EEXIST when building things in parallel.
+      #:parallel-build? #f))
    (synopsis "Cyrus SASL, an implementation of the Simple Authentication Security Layer framework")
    (description
     "SASL (Simple Authentication Security Layer) is an Internet
-- 
cgit v1.3